Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs2111829 chr14:78197283 T/C 8.31E-5 132 45.83 39.38 18.07 KM Plot
TGCT rs2112789 chr16:27807575 T/G 1.04E-5 133 46.53 33.55 17.27 KM Plot
TGCT rs2112920 chr19:37955248 C/G 5.33E-13 128 45.47 34.7 17.1 KM Plot
TGCT rs2113078 chr5:56087190 C/T 8.27E-6 134 69.48 41.27 43.97 KM Plot
TGCT rs2131588 chr5:1835306 C/T 1.73E-10 131 41.33 51.67 19.5 KM Plot
TGCT rs2131589 chr5:1835384 T/C 1.73E-10 131 41.33 51.67 19.5 KM Plot
TGCT rs2170988 chr12:129290876 A/C 1.39E-5 134 41.33 44.28 29.53 KM Plot
TGCT rs2172530 chr5:1835083 A/G 1.73E-10 131 41.33 51.67 19.5 KM Plot
TGCT rs2205259 chr8:116908222 G/A 7.41E-7 134 45.7 28.7 18.83 KM Plot
TGCT rs2217076 chr12:107053685 C/T 0.000103 134 48.87 38.2 28.8 KM Plot
TGCT rs2239661 chr13:111591265 G/A 0 133 39.38 57.7 0.57 KM Plot
TGCT rs2268686 chr6:42669108 G/A 4.75E-6 127 40.08 49.93 23.82 KM Plot
TGCT rs2268687 chr6:42668932 G/A 4.75E-6 127 40.08 49.93 23.82 KM Plot
TGCT rs227917 chr7:23646317 C/A 8.78E-5 132 53.65 36.23 50.45 KM Plot
TGCT rs227922 chr7:23652034 T/C 0.000124 128 53.65 36.23 48.35 KM Plot